JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXCL11_chr4_76028682_76041070	0/0	t0002	1195	113	2	23	77	3	8	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	1/1	t0003	1195	82	23	15	16	5	21	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	t0004	1195	43	20	9	12	0	2	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	t0005	1195	21	21	0	0	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	t0006	1195	1	1	0	0	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	t0007	1195	1	1	0	0	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	t0008	1195	1	1	0	0	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	t0009	1195	1	0	0	1	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	t0010	1195	1	1	0	0	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL12_chr10_44372067_44390097	1/1	t0001	1659	310	57	33	173	8	37	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0002	1661	53	5	21	18	4	5	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0003	1659	31	12	13	0	3	3	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0004	1659	13	12	1	0	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0005	1661	10	0	1	9	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0006	1655	8	7	1	0	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0007	1659	4	0	0	4	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0008	1659	3	0	0	3	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0009	1659	2	0	0	0	2	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0010	1647	1	0	0	0	0	1	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0011	1659	1	1	0	0	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0012	1659	1	0	1	0	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0013	1659	1	0	0	0	1	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0014	1659	1	1	0	0	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0015	1659	1	0	0	1	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0016	1659	1	0	1	0	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	t0017	1659	1	1	0	0	0	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL13_chr4_77600820_77616834	1/1	t0001	842	299	57	61	125	12	42	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0002	841	45	30	2	13	0	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0003	842	10	4	4	0	2	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0004	842	6	0	5	1	0	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0005	842	2	2	0	0	0	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0006	875	1	0	0	1	0	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0007	842	1	1	0	0	0	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0008	842	1	1	0	0	0	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL13_chr4_77600820_77616834	0/0	t0009	841	1	1	0	0	0	0	copy fasta	CXCL13	chr4	77600820	77616834
CXCL14_chr5_135565679_135583991	0/0	t0001	1365	108	13	23	56	6	10	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	1/0	t0002	1388	57	8	15	22	5	6	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0003	1371	32	2	3	20	1	6	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/1	t0004	1389	31	0	9	14	0	7	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0005	1387	26	11	7	6	0	2	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0006	1390	12	1	2	8	0	1	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0007	1370	12	12	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0008	1373	11	1	0	10	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0009	1364	9	0	0	9	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0010	1372	9	5	0	3	0	1	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0011	1366	8	5	1	1	0	1	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0012	1375	6	1	2	0	1	2	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0013	1370	6	0	2	1	1	2	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0014	1368	6	2	2	0	1	1	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0015	1391	5	0	1	4	0	0	copy fasta	CXCL14	chr5	135565679	135583991