JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXCL14_chr5_135565679_135583991	0/0	t0016	1386	5	1	0	3	1	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0017	1371	5	4	1	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0018	1369	5	2	0	3	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0019	1388	4	4	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0020	1388	4	2	2	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0021	1374	4	2	0	2	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0022	1370	4	4	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0023	1359	2	0	1	0	0	1	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0024	1365	2	2	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0025	1386	2	2	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0026	1371	2	0	1	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0027	1364	2	0	0	1	0	1	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0028	1358	2	0	0	2	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0029	1388	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0030	1365	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0031	1399	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0032	1391	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0033	1389	1	0	1	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0034	1389	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0035	1388	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0036	1388	1	0	1	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0037	1388	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0038	1388	1	0	1	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0039	1388	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0040	1387	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0041	1378	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0042	1373	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0043	1372	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0044	1372	1	0	0	0	0	1	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0045	1372	1	1	0	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0046	1370	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0047	1370	1	0	1	0	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0048	1367	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	t0049	1388	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL16_chr17_4728533_4744928	0/0	t0001	1560	138	2	29	86	6	15	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0002	1560	117	19	16	69	2	11	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0003	1560	50	5	9	20	2	14	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0004	1559	38	11	8	16	2	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0005	1560	20	18	1	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0006	1561	18	11	5	0	1	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0007	1560	10	0	6	0	3	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0008	1561	7	7	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	1/0	t0009	1560	7	6	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0010	1561	4	4	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/1	t0011	1560	3	0	1	0	0	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0012	1560	3	1	0	0	0	2	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0013	1560	3	0	0	3	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0014	1561	2	2	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0015	1560	2	2	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0016	1560	2	0	2	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928