JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXCL16_chr17_4728533_4744928	0/0	t0017	1560	2	2	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0018	1560	2	0	0	2	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0019	1560	1	1	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0020	1560	1	0	1	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0021	1560	1	1	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0022	1560	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0023	1560	1	1	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0024	1560	1	1	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0025	1560	1	0	0	0	0	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0026	1560	1	0	0	0	0	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0027	1560	1	1	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	t0028	1560	1	1	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL17_chr19_42423278_42447946	1/1	t0001	721	268	41	47	133	10	35	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	t0002	720	61	16	22	16	1	6	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	t0003	721	27	26	1	0	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	t0004	721	5	5	0	0	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	t0005	721	4	0	0	4	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	t0006	721	1	0	0	1	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	t0007	721	1	0	0	0	1	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	t0008	721	1	0	0	0	0	1	copy fasta	CXCL17	chr19	42423278	42447946
CXCL1_chr4_73864393_73876308	1/1	t0001	851	280	67	42	131	9	29	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0002	851	120	10	28	71	5	6	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0003	851	23	1	0	20	0	2	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0004	849	16	9	1	1	0	5	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0005	851	4	4	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0006	851	2	2	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0007	851	1	1	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0008	849	1	0	0	1	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	t0009	851	1	0	1	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL2_chr4_74092040_74104195	1/1	t0001	792	225	69	25	111	4	14	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0002	796	155	19	30	74	8	24	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0003	800	5	1	3	0	0	1	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0004	792	3	1	1	1	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0005	796	2	0	1	0	0	1	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0006	796	1	0	0	1	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0007	796	1	0	0	0	0	1	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0008	792	1	1	0	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0009	792	1	0	0	0	0	1	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0010	792	1	1	0	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0011	796	1	0	0	1	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0012	796	1	1	0	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	t0013	792	1	1	0	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL3_chr4_74031589_74043689	1/1	t0001	752	377	96	57	185	13	24	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	t0002	752	3	1	1	0	0	1	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	t0003	752	1	1	0	0	0	0	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	t0004	752	1	0	0	0	0	1	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	t0005	752	1	0	0	0	1	0	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	t0006	752	1	0	0	1	0	0	copy fasta	CXCL3	chr4	74031589	74043689
CXCL5_chr4_73990642_74003677	0/1	t0001	2092	189	40	20	105	6	17	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0002	2092	100	4	30	42	6	18	copy fasta	CXCL5	chr4	73990642	74003677