JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXCL5_chr4_73990642_74003677	1/0	t0003	2092	64	39	12	6	2	4	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0004	2092	15	0	0	15	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0005	2092	4	0	3	0	1	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0006	2092	3	2	1	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0007	2092	3	0	1	0	0	2	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0008	2092	2	2	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0009	2092	1	0	0	1	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0010	2092	1	1	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0011	2092	1	1	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0012	2092	1	0	1	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0013	2092	1	1	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0014	2092	1	1	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0015	2092	1	0	0	0	1	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0016	2116	1	1	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0017	2092	1	0	0	0	0	1	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	t0018	2092	1	0	0	1	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL6_chr4_73831678_73843760	0/1	t0001	1193	298	63	54	149	7	24	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0002	1193	110	9	21	64	9	7	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0003	1193	12	8	1	0	2	1	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	1/0	t0004	1193	6	5	0	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0005	1193	6	5	0	1	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0006	1193	3	3	0	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0007	1193	2	1	1	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0008	1193	1	1	0	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0009	1193	1	1	0	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0010	1193	1	1	0	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0011	1193	1	1	0	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0012	1193	1	0	0	0	0	1	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0013	1193	1	0	0	0	0	1	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	t0014	1193	1	0	1	0	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL8_chr4_73735569_73748716	1/0	t0001	1343	215	42	32	108	8	24	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/1	t0002	1343	123	11	19	69	8	15	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0003	1343	33	31	2	0	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0004	1343	4	4	0	0	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0005	1343	4	3	1	0	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0006	1343	2	2	0	0	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0007	1343	1	0	0	0	0	1	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0008	1343	1	0	0	1	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0009	1343	1	0	0	1	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0010	1343	1	1	0	0	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0011	1343	1	0	0	1	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0012	1343	1	0	0	1	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0013	1343	1	0	0	1	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0014	1343	1	1	0	0	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	t0015	1343	1	1	0	0	0	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL9_chr4_75996275_76012509	0/0	t0001	2384	149	2	16	116	2	13	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0002	2384	109	4	28	67	3	7	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	1/1	t0003	2384	81	20	17	17	7	18	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0004	2384	55	33	7	13	0	2	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0005	2384	17	16	1	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509