JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXCL9_chr4_75996275_76012509	0/0	t0006	2384	8	6	2	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0007	2384	7	7	0	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0008	2384	1	1	0	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0009	2384	1	0	0	1	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0010	2384	1	0	0	0	0	1	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0011	2384	1	0	0	1	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0012	2384	1	0	0	1	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0013	2384	1	0	0	0	0	1	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0014	2384	1	0	1	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0015	2384	1	1	0	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0016	2384	1	1	0	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	t0017	2384	1	1	0	0	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCR1_chr2_218157841_218171962	1/1	t0001	1407	321	76	73	115	14	41	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0002	1407	9	8	1	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0003	1407	4	2	0	0	0	2	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0004	1407	2	2	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0005	1407	2	0	0	2	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0006	1407	1	0	0	0	0	1	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0007	1407	1	1	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0008	1407	1	0	0	1	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0009	1407	1	0	0	1	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0010	1407	1	1	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	t0011	1407	1	0	0	1	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR2_chr2_218121028_218142251	1/0	t0001	1771	139	10	27	82	6	13	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/1	t0002	1772	112	39	23	28	6	15	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0003	1772	48	7	11	25	0	5	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0004	1771	11	10	1	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0005	1771	10	9	0	1	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0006	1771	10	0	3	4	0	3	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0007	1771	5	3	0	0	0	2	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0008	1771	5	5	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0009	1771	4	0	0	4	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0010	1771	3	0	0	3	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0011	1772	2	0	0	2	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0012	1771	2	2	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0013	1772	2	0	0	2	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0014	1772	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0015	1772	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0016	1772	1	0	0	1	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0017	1771	1	0	1	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0018	1772	1	0	1	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0019	1771	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0020	1771	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0021	1771	1	0	0	1	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0022	1771	1	0	0	1	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0023	1771	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	t0024	1772	1	0	1	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR3_chrX_71610919_71623511	1/1	t0001	509	319	69	54	153	9	32	copy fasta	CXCR3	chrX	71610919	71623511
CXCR3_chrX_71610919_71623511	0/0	t0002	509	2	0	2	0	0	0	copy fasta	CXCR3	chrX	71610919	71623511
CXCR3_chrX_71610919_71623511	0/0	t0003	509	1	1	0	0	0	0	copy fasta	CXCR3	chrX	71610919	71623511