JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXCR3_chrX_71610919_71623511	0/0	t0004	508	1	0	1	0	0	0	copy fasta	CXCR3	chrX	71610919	71623511
CXCR4_chr2_136109349_136123149	1/1	t0001	610	399	92	82	171	14	38	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	t0002	610	2	0	0	2	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	t0003	610	1	1	0	0	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	t0004	610	1	0	0	1	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	t0005	610	1	1	0	0	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	t0006	610	1	1	0	0	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	t0007	610	1	1	0	0	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR5_chr11_118878892_118902787	1/0	t0001	3175	161	20	22	80	8	30	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/1	t0002	3177	40	1	24	9	2	3	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0003	3175	17	7	5	4	1	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0004	3175	16	10	3	0	0	3	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0005	3175	16	0	0	16	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0006	3176	15	13	2	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0007	3176	15	13	1	0	1	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0008	3175	12	0	2	6	1	3	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0009	3176	9	9	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0010	3175	8	0	6	0	0	2	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0011	3175	7	0	5	2	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0012	3175	6	0	2	4	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0013	3175	5	5	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0014	3175	4	4	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0015	3175	3	0	2	0	0	1	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0016	3177	2	0	0	0	0	2	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0017	3175	2	0	0	1	0	1	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0018	3175	2	2	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0019	3176	2	2	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0020	3175	2	2	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0021	3192	2	1	1	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0022	3175	2	2	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0023	3177	2	0	0	2	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0024	3175	1	0	0	0	0	1	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0025	3175	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0026	3175	1	0	1	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0027	3175	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0028	3175	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0029	3175	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0030	3175	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0031	3176	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0032	3175	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0033	3175	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0034	3175	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0035	3176	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0036	3176	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0037	3175	1	0	1	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0038	3176	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0039	3175	1	0	1	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0040	3176	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	t0041	3175	1	0	0	0	1	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR6_chr3_45938464_45953351	0/0	t0001	940	202	18	39	108	7	30	copy fasta	CXCR6	chr3	45938464	45953351