JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXCR6_chr3_45938464_45953351	1/1	t0002	940	184	46	26	90	9	11	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	t0003	940	10	10	0	0	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	t0004	940	10	9	1	0	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	t0005	940	8	8	0	0	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	t0006	940	3	0	0	3	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	t0007	940	1	0	0	1	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	t0008	940	1	0	0	0	0	1	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	t0009	940	1	1	0	0	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXXC1_chr18_50277347_50292692	1/1	t0001	350	401	98	80	158	18	45	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	t0002	350	20	0	0	19	0	1	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	t0003	350	1	0	0	1	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC4_chr4_104463308_104499894	1/1	t0001	4466	100	4	19	59	2	14	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0002	4469	61	9	20	20	3	9	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0003	4467	40	18	1	20	0	1	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0004	4470	27	1	7	18	0	1	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0005	4468	9	2	1	4	0	2	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0006	4468	8	6	2	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0007	4468	8	6	1	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0008	4469	6	6	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0009	4470	6	0	1	1	2	2	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0010	4469	4	4	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0011	4469	4	3	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0012	4469	4	4	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0013	4470	4	0	1	0	1	2	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0014	4467	4	4	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0015	4465	4	0	4	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0016	4466	3	2	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0017	4467	3	2	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0018	4467	3	0	0	3	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0019	4469	2	2	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0020	4470	2	1	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0021	4465	2	2	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0022	4469	2	2	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0023	4466	2	2	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0024	4466	2	0	2	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0025	4469	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0026	4468	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0027	4469	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0028	4468	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0029	4468	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0030	4471	1	0	0	0	0	1	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0031	4468	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0032	4468	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0033	4468	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0034	4469	1	0	0	0	0	1	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0035	4469	1	0	0	0	0	1	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0036	4470	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0037	4469	1	0	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0038	4470	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0039	4471	1	0	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894