JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CXXC4_chr4_104463308_104499894	0/0	t0040	4470	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0041	4466	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0042	4469	1	0	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0043	4468	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0044	4466	1	0	0	0	0	1	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0045	4469	1	1	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	t0046	4466	1	0	0	0	0	1	copy fasta	CXXC4	chr4	104463308	104499894
CXXC5_chr5_139643349_139688882	1/1	t0001	1633	219	69	55	57	12	24	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0002	1633	14	13	1	0	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0003	1633	13	1	1	3	3	5	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0004	1633	11	3	1	3	0	4	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0005	1633	4	4	0	0	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0006	1633	1	0	1	0	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0007	1633	1	0	0	1	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0008	1633	1	0	0	0	0	1	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0009	1633	1	0	0	0	1	0	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	t0010	1633	1	0	1	0	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXorf38_chrX_40621921_40652561	0/0	t0001	3284	100	2	19	59	6	14	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0002	3280	28	13	0	13	0	2	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0003	3282	21	6	9	6	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	1/1	t0004	3284	16	1	9	0	4	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0005	3285	13	0	3	7	0	3	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0006	3284	10	0	1	9	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0007	3283	7	7	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0008	3283	7	4	0	1	2	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0009	3285	6	4	2	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0010	3282	5	4	1	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0011	3282	5	4	0	0	0	1	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0012	3280	5	0	1	0	0	4	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0013	3284	5	5	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0014	3283	4	0	4	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0015	3286	4	4	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0016	3284	4	0	0	4	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0017	3284	3	0	0	3	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0018	3285	3	0	0	3	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0019	3281	3	3	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0020	3282	3	3	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0021	3285	3	0	0	3	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0022	3282	2	2	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0023	3281	2	2	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0024	3282	2	2	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0025	3283	2	2	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0026	3283	2	2	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0027	3283	2	1	1	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0028	3284	2	0	0	2	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0029	3281	2	2	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0030	3284	2	0	0	2	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0031	3284	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0032	3285	1	0	0	1	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	t0033	3284	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561