Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADH7_chr4_99407263_99440342	0/1	t0006	995	21	4	8	5	0	3	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0007	995	10	1	1	7	0	1	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0008	995	7	1	2	0	3	1	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0009	995	4	0	3	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0010	995	3	0	0	1	0	2	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0011	995	3	3	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0012	995	3	0	0	3	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0013	995	2	0	0	2	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0014	995	1	0	0	0	0	1	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0015	995	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0016	995	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0017	995	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	t0018	995	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADHFE1_chr8_66427504_66473907	0/1	t0001	569	201	53	53	67	5	22	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	1/0	t0002	569	109	16	15	55	4	18	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	t0003	569	64	13	5	44	1	1	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	t0004	569	26	11	1	13	0	1	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	t0005	569	1	0	0	1	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	t0006	569	1	1	0	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADI1_chr2_3492366_3524531	1/1	t0001	1642	150	13	38	66	9	22	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0002	1642	107	19	23	52	3	10	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0003	1642	50	17	4	24	1	4	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0004	1642	30	29	1	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0005	1642	24	4	1	16	1	2	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0006	1642	10	0	0	10	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0007	1642	9	2	0	7	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0008	1642	6	6	0	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0009	1642	3	3	0	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0010	1642	1	0	0	1	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0011	1642	1	1	0	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	t0012	1642	1	0	1	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADIG_chr20_38576197_38593463	1/1	t0001	432	367	91	60	158	14	42	copy fasta	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	t0002	432	3	3	0	0	0	0	copy fasta	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	t0003	432	1	0	0	1	0	0	copy fasta	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	t0004	432	1	0	0	1	0	0	copy fasta	ADIG	chr20	38576197	38593463
ADIPOQ_chr3_186837710_186863463	0/0	t0001	3809	119	21	21	66	6	5	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0002	3810	107	6	30	45	5	21	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/1	t0003	3807	91	2	18	55	4	11	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0004	3810	22	0	0	22	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0005	3810	18	0	0	18	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0006	3810	16	15	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0007	3810	7	5	2	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0008	3808	7	6	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0009	3810	5	5	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0010	3807	5	5	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	1/0	t0011	3808	5	4	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0012	3810	4	3	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0013	3810	4	3	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0014	3809	4	4	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0015	3810	3	0	1	0	0	2	copy fasta	ADIPOQ	chr3	186837710	186863463