JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYB561D1_chr1_109489094_109505435	0/0	t0035	4221	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0036	4217	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0037	4222	1	0	1	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0038	4222	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0039	4222	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0040	4221	1	0	0	1	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0041	4238	1	0	0	0	1	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0042	4223	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0043	4217	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0044	4221	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0045	4221	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0046	4223	1	0	0	1	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0047	4221	1	0	0	1	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0048	4221	1	0	1	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0049	4238	1	0	0	0	0	1	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0050	4221	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0051	4217	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0052	4199	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0053	4216	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0054	4218	1	0	0	0	0	1	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0055	4200	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0056	4199	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	t0057	4200	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D2_chr3_50345862_50359069	1/1	t0001	474	235	66	44	80	16	27	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	t0002	474	101	14	18	68	0	1	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	t0003	474	6	5	0	1	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	t0004	474	4	0	4	0	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	t0005	474	1	0	0	1	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	t0006	474	1	1	0	0	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561_chr17_63427304_63451306	0/1	t0001	2174	163	54	38	48	6	16	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	1/0	t0002	2174	152	11	30	80	10	20	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0003	2177	14	12	2	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0004	2174	13	12	1	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0005	2175	8	0	7	0	0	1	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0006	2177	7	1	0	6	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0007	2174	5	0	1	0	0	4	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0008	2174	4	0	0	4	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0009	2174	4	0	0	4	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0010	2174	3	3	0	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0011	2174	2	1	1	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0012	2174	2	0	0	2	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0013	2174	2	0	0	2	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0014	2177	2	2	0	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0015	2174	1	1	0	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0016	2174	1	0	0	1	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0017	2174	1	1	0	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0018	2174	1	0	0	0	0	1	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	t0019	2177	1	0	0	1	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB5A_chr18_74245846_74296963	0/1	t0001	2827	163	29	35	77	5	16	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0002	2827	54	7	9	30	1	7	copy fasta	CYB5A	chr18	74245846	74296963