JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYB5A_chr18_74245846_74296963	0/0	t0003	2827	47	4	10	29	3	1	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0004	2828	42	6	2	34	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	1/0	t0005	2827	11	7	3	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0006	2828	8	6	0	2	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0007	2827	6	5	1	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0008	2827	5	4	1	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0009	2827	4	0	0	4	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0010	2828	4	1	0	0	0	3	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0011	2827	4	0	0	4	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0012	2827	3	3	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0013	2828	3	1	0	1	0	1	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0014	2828	3	2	1	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0015	2828	3	0	0	3	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0016	2827	3	0	0	0	0	3	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0017	2827	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0018	2827	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0019	2828	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0020	2827	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0021	2827	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0022	2827	2	0	0	1	1	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0023	2827	2	0	2	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0024	2827	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0025	2827	2	0	1	0	0	1	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0026	2827	1	0	0	1	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0027	2827	1	1	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0028	2827	1	1	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0029	2827	1	0	0	1	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0030	2827	1	0	0	1	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0031	2827	1	0	0	1	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0032	2827	1	1	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0033	2827	1	0	0	1	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0034	2827	1	0	1	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0035	2827	1	1	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0036	2827	1	1	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0037	2827	1	0	0	0	0	1	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0038	2828	1	0	0	1	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0039	2827	1	0	0	1	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	t0040	2827	1	0	0	0	0	1	copy fasta	CYB5A	chr18	74245846	74296963
CYB5B_chr16_69419619_69471264	0/0	t0001	3810	91	10	28	38	5	10	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	1/0	t0002	3810	89	2	12	67	2	5	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0003	3810	69	4	9	47	2	7	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/1	t0004	3811	33	30	0	0	1	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0005	3810	25	19	0	1	0	5	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0006	3810	15	0	0	15	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0007	3810	14	14	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0008	3810	13	0	2	10	0	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0009	3811	10	8	2	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0010	3806	7	0	2	0	1	4	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0011	3810	5	0	5	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0012	3810	4	0	1	0	3	0	copy fasta	CYB5B	chr16	69419619	69471264