JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYB5B_chr16_69419619_69471264	0/0	t0013	3810	4	0	0	4	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0014	3810	3	0	0	3	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0015	3810	3	2	1	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0016	3810	2	0	0	0	2	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0017	3806	2	0	2	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0018	3810	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0019	3811	1	1	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0020	3810	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0021	3810	1	1	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0022	3811	1	1	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0023	3810	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0024	3810	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0025	3810	1	0	0	0	0	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0026	3810	1	1	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0027	3810	1	1	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0028	3810	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0029	3810	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0030	3810	1	0	0	0	0	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0031	3810	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0032	3810	1	1	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0033	3810	1	0	0	0	0	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	t0034	3811	1	1	0	0	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5D1_chr17_7853003_7867282	0/1	t0001	2803	221	51	45	82	13	29	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0002	2802	106	26	17	52	0	11	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0003	2802	40	1	10	18	5	6	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0004	2803	38	0	3	34	0	1	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0005	2803	7	0	0	7	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0006	2802	6	6	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0007	2802	4	0	0	4	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0008	2802	3	3	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0009	2803	2	1	1	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0010	2802	2	0	0	2	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0011	2803	2	2	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0012	2803	2	0	2	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0013	2802	1	1	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0014	2802	1	1	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	1/0	t0015	2803	1	0	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0016	2803	1	1	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0017	2803	1	1	0	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0018	2803	1	0	0	0	0	1	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	t0019	2803	1	0	0	1	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D2_chr17_4138197_4162697	0/0	t0001	1174	161	18	34	84	8	17	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0002	1173	74	14	3	48	3	6	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/1	t0003	1174	29	1	5	14	1	7	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	1/0	t0004	1175	27	23	3	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0005	1174	26	16	6	4	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0006	1175	11	11	0	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0007	1174	10	0	3	0	4	3	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0008	1174	5	1	4	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0009	1174	4	4	0	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697