JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYB5D2_chr17_4138197_4162697	0/0	t0010	1173	3	0	3	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0011	1173	2	0	0	2	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0012	1175	2	1	1	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0013	1174	2	0	0	2	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0014	1174	2	0	1	0	1	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0015	1175	2	1	1	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0016	1174	1	1	0	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0017	1175	1	1	0	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0018	1175	1	1	0	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0019	1175	1	1	0	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0020	1175	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0021	1174	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0022	1174	1	0	0	0	1	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0023	1174	1	0	1	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0024	1174	1	0	1	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	t0025	1174	1	0	0	0	0	1	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5R1_chr1_202956873_202972257	1/1	t0001	707	426	93	78	205	10	38	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	t0002	707	19	0	0	19	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	t0003	707	3	3	0	0	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	t0004	707	1	0	0	0	0	1	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	t0005	707	1	0	0	0	0	1	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R2_chr11_7660104_7678500	0/0	t0001	423	163	24	13	114	3	9	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	1/0	t0002	419	107	16	29	45	3	13	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/1	t0003	423	69	5	25	17	7	14	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0004	419	49	14	12	16	3	4	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0005	419	26	13	3	7	0	3	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0006	419	14	12	2	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0007	419	4	0	2	0	2	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0008	419	2	2	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0009	419	2	2	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0010	423	2	2	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0011	423	1	0	0	0	0	1	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0012	423	1	0	0	1	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0013	419	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0014	419	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0015	393	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	t0016	419	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R3_chr22_42612840_42654392	0/0	t0001	2012	60	1	18	25	3	13	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0002	2012	59	16	9	26	2	6	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0003	2011	54	0	2	47	0	5	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	1/1	t0004	2011	33	6	16	2	2	5	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0005	2010	32	0	10	10	2	10	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0006	2012	10	0	0	10	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0007	2012	6	5	1	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0008	2011	6	0	0	6	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0009	2012	5	5	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0010	2012	5	4	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0011	2010	4	0	1	0	0	3	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0012	2012	4	3	1	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	t0013	2014	4	4	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392