JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYB5R3_chr22_42612840_42654392	0/0	t0064	1835	1	1	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R4_chr6_83854689_83972423	1/1	t0001	7640	90	11	27	37	5	8	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0002	7640	27	0	2	25	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0003	7640	17	0	7	10	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0004	7640	12	12	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0005	7640	11	11	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0006	7630	9	5	1	0	2	1	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0007	7640	8	8	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0008	7630	5	5	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0009	7639	4	4	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0010	7630	4	4	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0011	7640	3	2	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0012	7640	3	2	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0013	7630	3	2	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0014	7630	2	1	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0015	7640	2	0	1	0	0	1	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0016	7640	2	2	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0017	7640	2	2	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0018	7640	2	0	0	2	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0019	7640	2	2	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0020	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0021	7639	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0022	7640	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0023	7640	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0024	7640	1	0	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0025	7640	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0026	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0027	7640	1	0	0	0	1	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0028	7640	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0029	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0030	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0031	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0032	7640	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0033	7640	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0034	7640	1	0	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0035	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0036	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0037	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0038	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	t0039	7640	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5RL_chr1_54164651_54205030	0/1	t0001	5249	110	22	24	44	4	15	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0002	5246	53	5	0	42	0	6	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0003	5248	20	0	3	17	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0004	5246	19	4	10	0	3	2	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0005	5249	17	0	2	14	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	1/0	t0006	5246	16	5	1	1	2	6	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0007	5249	14	0	1	10	0	3	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0008	5250	13	2	3	5	0	3	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0009	5247	9	1	1	6	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0010	5250	8	0	7	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030