JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYB5RL_chr1_54164651_54205030	0/0	t0011	5249	8	8	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0012	5249	7	0	4	0	2	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0013	5246	7	7	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0014	5246	5	4	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0015	5248	5	0	1	0	2	2	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0016	5250	4	0	0	4	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0017	5246	4	4	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0018	5244	4	4	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0019	5247	3	2	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0020	5250	3	0	0	3	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0021	5249	3	0	0	3	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0022	5247	3	0	0	3	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0023	5248	3	1	1	0	1	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0024	5248	3	3	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0025	5248	3	0	3	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0026	5246	2	2	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0027	5249	2	0	0	2	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0028	5249	2	0	1	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0029	5249	2	0	0	2	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0030	5248	2	0	2	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0031	5246	2	0	2	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0032	5246	2	0	0	2	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0033	5248	2	0	0	0	2	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0034	5250	2	2	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0035	5246	2	0	0	2	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0036	5248	2	2	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0037	5246	2	0	0	2	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0038	5247	1	0	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0039	5249	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0040	5246	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0041	5249	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0042	5249	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0043	5248	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0044	5250	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0045	5249	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0046	5248	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0047	5248	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0048	5246	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0049	5249	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0050	5246	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0051	5249	1	0	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0052	5249	1	0	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0053	5250	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0054	5250	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0055	5248	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0056	5249	1	0	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0057	5249	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0058	5249	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0059	5248	1	0	0	0	1	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0060	5248	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030