JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYB5RL_chr1_54164651_54205030	0/0	t0061	5248	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0062	5246	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0063	5247	1	0	0	0	1	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0064	5247	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0065	5247	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0066	5247	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0067	5246	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0068	5246	1	0	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0069	5246	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0070	5246	1	0	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0071	5246	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0072	5250	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0073	5248	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0074	5249	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0075	5249	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0076	5249	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0077	5246	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0078	5246	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0079	5246	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0080	5249	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	t0081	5249	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYBA_chr16_88638289_88656053	0/0	t0001	105	229	53	42	103	8	23	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/1	t0002	105	124	36	7	62	3	15	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	1/0	t0003	105	104	9	37	42	3	12	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	t0004	105	2	0	0	0	2	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	t0005	105	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBB_chrX_37775059_37818461	1/1	t0001	2564	156	16	29	85	9	15	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0002	2563	39	20	8	5	0	6	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0003	2565	10	7	3	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0004	2563	8	0	1	4	0	3	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0005	2565	7	4	1	1	0	1	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0006	2566	6	5	1	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0007	2564	4	4	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0008	2564	3	3	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0009	2564	3	3	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0010	2564	2	2	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0011	2564	1	1	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0012	2562	1	1	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0013	2563	1	0	0	0	0	1	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0014	2566	1	1	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0015	2564	1	0	0	1	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0016	2564	1	1	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0017	2565	1	1	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	t0018	2563	1	1	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBC1_chr17_82437586_82455752	1/1	t0001	1510	224	51	43	86	17	25	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0002	1606	81	1	22	47	0	11	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0003	1510	30	0	1	23	1	5	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0004	1558	12	12	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0005	1606	11	1	0	9	0	1	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0006	1462	9	0	8	0	0	1	copy fasta	CYBC1	chr17	82437586	82455752