Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADIPOQ_chr3_186837710_186863463	0/0	t0016	3810	3	0	0	3	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0017	3809	3	0	0	3	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0018	3809	2	0	1	0	0	1	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0019	3810	2	0	0	0	0	2	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0020	3826	2	0	2	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0021	4145	2	0	0	2	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0022	3807	2	0	1	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0023	3809	2	0	0	2	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0024	3809	2	2	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0025	3808	2	2	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0026	3808	2	2	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0027	3807	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0028	3810	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0029	3810	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0030	3809	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0031	3810	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0032	3810	1	0	0	0	0	1	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0033	3810	1	0	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0034	3810	1	0	0	0	0	1	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0035	3810	1	0	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0036	3812	1	0	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0037	3808	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0038	3808	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0039	3810	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0040	3810	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0041	4143	1	0	0	0	0	1	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0042	4144	1	0	0	0	0	1	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0043	4147	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0044	4148	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0045	4149	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0046	3810	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0047	3808	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0048	3809	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0049	3808	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0050	3808	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0051	3809	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0052	3808	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0053	3807	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0054	3807	1	0	1	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0055	3807	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0056	3809	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0057	3807	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0058	3809	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0059	3809	1	0	0	0	0	1	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0060	3809	1	0	0	0	0	1	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0061	4144	1	0	0	0	1	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0062	3808	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0063	3808	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0064	3808	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0065	3810	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463