JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYBC1_chr17_82437586_82455752	0/0	t0007	1462	9	9	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0008	1462	5	5	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0009	1702	5	0	0	5	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0010	1510	5	4	1	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0011	1462	4	2	1	0	0	1	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0012	1414	3	3	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0013	1510	2	0	2	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0014	1606	2	2	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0015	1510	2	0	0	2	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0016	1462	2	2	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0017	1510	1	0	0	1	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0018	1558	1	1	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0019	1462	1	1	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0020	1558	1	1	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0021	1558	1	0	0	1	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0022	1606	1	0	0	1	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0023	1510	1	1	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0024	1462	1	1	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0025	1462	1	1	0	0	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	t0026	1606	1	0	0	1	0	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBRD1_chr2_171517474_171563129	1/0	t0001	3375	132	10	19	89	4	9	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0002	3374	101	18	29	27	4	23	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0003	3375	43	4	3	26	2	8	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0004	3375	18	15	2	0	0	1	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0005	3374	17	0	0	17	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0006	3374	16	16	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/1	t0007	3375	14	0	5	6	1	1	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0008	3375	11	1	3	6	1	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0009	3375	7	7	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0010	3374	6	0	0	6	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0011	3375	5	5	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0012	3375	4	0	0	4	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0013	3374	3	3	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0014	3374	2	0	2	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0015	3375	2	2	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0016	3374	2	2	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0017	3375	1	1	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0018	3375	1	1	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0019	3375	1	0	1	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0020	3375	1	0	1	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0021	3375	1	0	1	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0022	3375	1	0	0	1	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0023	3375	1	0	0	1	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0024	3375	1	0	0	1	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0025	3375	1	1	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0026	3375	1	0	0	1	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	t0027	3375	1	0	0	1	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYC1_chr8_144090076_144102525	1/1	t0001	214	351	92	78	129	16	34	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	t0002	214	1	0	0	1	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYCS_chr7_25113656_25130260	1/1	t0001	5115	91	8	20	47	4	10	copy fasta	CYCS	chr7	25113656	25130260