JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYCS_chr7_25113656_25130260	0/0	t0002	5116	67	4	16	31	1	15	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0003	5120	66	20	6	32	4	4	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0004	5121	65	2	12	40	2	9	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0005	5122	27	4	2	19	1	1	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0006	5122	15	12	3	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0007	5115	12	10	2	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0008	5115	10	0	0	9	0	1	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0009	5120	6	6	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0010	5116	4	0	1	0	3	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0011	5112	4	3	1	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0012	5115	4	4	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0013	5121	4	4	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0014	5121	3	0	0	0	0	3	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0015	5121	3	3	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0016	5115	2	0	1	0	1	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0017	5121	2	0	2	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0018	5122	2	0	0	2	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0019	5121	2	0	0	2	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0020	5121	2	0	0	2	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0021	5121	2	2	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0022	5122	2	2	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0023	5121	2	1	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0024	5122	2	0	2	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0025	5122	2	2	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0026	5121	2	2	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0027	5121	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0028	5121	1	0	0	0	0	1	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0029	5084	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0030	5115	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0031	5115	1	0	1	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0032	5119	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0033	5116	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0034	5116	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0035	5116	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0036	5116	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0037	5116	1	0	0	0	0	1	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0038	5116	1	0	0	0	0	1	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0039	5116	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0040	5116	1	0	1	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0041	5116	1	0	1	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0042	5116	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0043	5115	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0044	5121	1	0	1	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0045	5120	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0046	5121	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0047	5121	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0048	5120	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0049	5121	1	0	0	0	0	1	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0050	5117	1	0	0	0	0	1	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0051	5116	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260