JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYCS_chr7_25113656_25130260	0/0	t0052	5121	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0053	5122	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0054	5084	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0055	5116	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0056	5122	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0057	5116	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0058	5116	1	1	0	0	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYCS_chr7_25113656_25130260	0/0	t0059	5115	1	0	0	1	0	0	copy fasta	CYCS	chr7	25113656	25130260
CYFIP1_chr15_22862052_22985368	0/1	t0001	3061	76	11	15	34	2	13	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0002	3066	42	0	2	38	1	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0003	3072	41	1	1	36	0	3	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	1/0	t0004	3065	30	1	11	12	4	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0005	3069	24	13	7	2	1	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0006	3066	18	3	4	0	4	7	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0007	3068	14	11	3	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0008	3068	12	10	2	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0009	3065	9	7	2	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0010	3068	6	5	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0011	3069	6	0	3	0	0	3	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0012	3072	4	3	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0013	3072	4	4	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0014	3065	4	3	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0015	3062	4	4	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0016	3061	4	0	4	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0017	3072	3	0	0	0	0	3	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0018	3066	3	2	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0019	3065	3	0	1	0	2	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0020	3068	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0021	3071	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0022	3071	2	1	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0023	3069	2	0	0	0	1	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0024	3062	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0025	3061	2	0	0	2	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0026	3069	2	0	0	0	0	2	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0027	3061	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0028	3066	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0029	3061	1	0	0	0	0	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0030	3064	1	0	0	0	1	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0031	3068	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0032	3065	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0033	3068	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0034	3061	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0035	3066	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0036	3066	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0037	3062	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0038	3061	1	0	0	0	0	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0039	3066	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0040	3065	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0041	3072	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0042	3069	1	0	0	0	0	1	copy fasta	CYFIP1	chr15	22862052	22985368