JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYFIP1_chr15_22862052_22985368	0/0	t0043	3068	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0044	3068	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0045	3061	1	0	0	0	0	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0046	3066	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	t0047	3061	1	0	0	0	0	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP2_chr5_157261123_157400594	0/1	t0001	2690	108	21	23	53	4	6	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	1/0	t0002	2691	92	14	19	53	2	3	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0003	2691	32	3	4	9	3	13	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0004	2692	19	4	7	3	3	2	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0005	2715	19	16	3	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0006	2692	16	7	0	0	0	9	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0007	2690	7	6	1	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0008	2691	6	6	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0009	2691	4	4	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0010	2692	3	0	1	0	1	1	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0011	2690	3	1	2	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0012	2691	2	2	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0013	2690	2	0	0	2	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0014	2690	2	0	0	0	0	2	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0015	2691	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0016	2690	1	0	1	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0017	2690	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0018	2690	1	0	1	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0019	2692	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0020	2692	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0021	2692	1	0	1	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0022	2692	1	0	1	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0023	2691	1	0	0	0	1	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0024	2691	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	t0025	2691	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYGB_chr17_76522356_76542709	0/1	t0001	1390	161	6	33	103	5	13	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	1/0	t0002	1390	120	15	25	42	11	26	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0003	1390	29	17	1	7	0	4	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0004	1390	23	17	3	0	0	3	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0005	1390	10	0	4	6	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0006	1390	8	8	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0007	1392	6	6	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0008	1390	6	0	6	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0009	1392	5	5	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0010	1390	5	5	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0011	1390	4	3	1	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0012	1390	3	2	1	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0013	1390	3	3	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0014	1390	2	2	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0015	1390	2	2	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0016	1392	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0017	1390	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0018	1390	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0019	1390	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0020	1390	1	0	0	0	0	1	copy fasta	CYGB	chr17	76522356	76542709