JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYGB_chr17_76522356_76542709	0/0	t0021	1390	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0022	1390	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0023	1390	1	0	0	0	0	1	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	t0024	1390	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYLC1_chrX_83856146_83891698	1/1	t0001	152	207	40	39	89	11	26	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	t0002	152	1	0	0	0	0	1	copy fasta	CYLC1	chrX	83856146	83891698
CYLC2_chr9_102990333_103023488	0/0	t0001	1091	53	7	7	29	0	10	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/1	t0002	1085	53	6	11	30	3	2	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0003	1111	24	6	0	17	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0004	1109	23	1	0	21	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0005	1107	22	2	7	10	0	3	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0006	1089	22	6	5	10	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0007	1093	21	1	8	7	0	5	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0008	1113	20	0	5	11	0	4	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0009	1105	16	1	3	9	0	3	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0010	1093	13	0	0	12	1	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0011	1101	11	9	1	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0012	1115	9	1	3	4	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0013	1105	9	2	0	4	0	3	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0014	1099	9	3	4	2	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0015	1095	8	0	0	8	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0016	1095	8	1	0	4	1	2	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0017	1079	7	0	0	7	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0018	1105	7	3	3	0	1	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0019	1099	7	3	3	0	1	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0020	1097	7	3	2	1	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0021	1097	6	3	1	0	1	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0022	1091	5	0	0	5	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0023	1117	5	0	2	3	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0024	1103	5	1	0	3	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0025	1087	5	1	1	3	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0026	1111	4	4	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0027	1107	4	1	2	0	1	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0028	1105	4	1	3	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0029	1103	4	0	3	0	1	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0030	1083	4	0	0	4	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0031	1097	3	0	0	2	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	1/0	t0032	1103	3	0	2	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0033	1103	3	3	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0034	1103	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0035	1109	2	0	0	2	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0036	1109	2	1	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0037	1107	2	0	0	1	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0038	1103	2	1	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0039	1101	2	1	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0040	1091	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0041	1081	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0042	1094	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0043	1095	2	1	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0044	1107	1	0	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488