JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYLC2_chr9_102990333_103023488	0/0	t0045	1101	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0046	1099	1	0	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0047	1123	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0048	1121	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0049	1119	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0050	1117	1	0	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0051	1111	1	0	0	0	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0052	1107	1	0	0	0	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0053	1105	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0054	1093	1	0	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0055	1089	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0056	1085	1	0	0	0	0	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0057	1081	1	0	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0058	1100	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0059	1098	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0060	1088	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0061	1095	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0062	1093	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0063	1111	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0064	1099	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0065	1099	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0066	1093	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	t0067	1088	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLD_chr16_50737086_50806935	1/1	t0001	5670	197	42	40	83	10	20	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0002	5669	28	2	6	14	0	6	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0003	5667	22	15	0	7	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0004	5669	10	2	6	1	1	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0005	5669	7	7	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0006	5670	6	0	0	6	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0007	5669	4	4	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0008	5669	4	4	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0009	5669	3	3	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0010	5670	2	1	1	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0011	5670	2	1	1	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0012	5669	2	0	0	2	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0013	5670	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0014	5670	1	1	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0015	5669	1	0	1	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0016	5670	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0017	5670	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0018	5670	1	0	1	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0019	5670	1	0	0	0	1	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0020	5670	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0021	5670	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0022	5667	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0023	5669	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0024	5670	1	1	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0025	5667	1	1	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0026	5670	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	t0027	5670	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935