JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP19A1_chr15_51203057_51343596	0/0	t0004	2892	26	6	11	1	2	6	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0005	2893	12	12	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0006	2893	8	0	0	8	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0007	2892	6	0	6	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0008	2892	5	0	0	5	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0009	2892	5	0	3	2	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0010	2893	4	4	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0011	2892	4	2	2	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0012	2892	4	0	0	4	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0013	2892	3	3	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0014	2892	2	0	0	2	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0015	2893	2	1	1	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0016	2892	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0017	2892	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0018	2892	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0019	2893	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0020	2892	1	0	0	0	0	1	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0021	2892	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0022	2892	1	0	1	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0023	2893	1	0	0	1	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0024	2892	1	0	0	1	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	t0025	2893	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP1A1_chr15_74714542_74730528	1/1	t0001	1065	406	73	68	198	16	49	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0002	1065	11	9	2	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0003	1065	8	8	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0004	1065	3	3	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0005	1065	1	0	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0006	1065	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0007	1065	1	1	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0008	1065	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0009	1065	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	t0010	1065	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A2_chr15_74743845_74761607	1/0	t0001	1582	92	22	14	36	4	15	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/1	t0002	1583	63	6	24	16	9	7	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0003	1582	57	2	11	40	1	3	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0004	1583	33	0	5	19	0	9	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0005	1581	26	10	1	12	1	2	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0006	1581	21	0	0	20	0	1	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0007	1583	16	1	0	15	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0008	1583	12	12	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0009	1582	7	7	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0010	1581	7	6	1	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0011	1582	6	6	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0012	1583	6	3	2	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0013	1583	5	1	0	3	0	1	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0014	1582	5	1	4	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0015	1583	5	0	0	5	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0016	1582	5	2	1	2	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0017	1581	4	4	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0018	1582	4	0	0	4	0	0	copy fasta	CYP1A2	chr15	74743845	74761607