JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP1A2_chr15_74743845_74761607	0/0	t0019	1583	3	2	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0020	1581	3	0	0	3	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0021	1582	2	0	0	2	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0022	1582	2	0	0	0	0	2	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0023	1582	2	2	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0024	1584	2	0	0	1	0	1	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0025	1582	2	0	0	0	0	2	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0026	1583	2	0	0	0	2	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0027	1582	1	0	1	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0028	1582	1	0	1	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0029	1583	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0030	1582	1	0	1	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0031	1585	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0032	1581	1	0	0	0	1	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0033	1582	1	0	1	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0034	1583	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0035	1584	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0036	1583	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0037	1584	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0038	1584	1	0	0	0	0	1	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0039	1582	1	0	1	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0040	1584	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0041	1582	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0042	1583	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0043	1584	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0044	1584	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0045	1583	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0046	1582	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0047	1583	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0048	1583	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0049	1580	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	t0050	1582	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1B1_chr2_38062509_38081151	0/0	t0001	3587	181	7	44	97	3	30	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	1/1	t0002	3586	41	11	7	15	2	4	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0003	3586	38	13	9	6	6	4	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0004	3586	16	0	6	6	2	2	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0005	3586	11	10	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0006	3586	10	8	2	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0007	3587	8	0	0	8	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0008	3586	6	6	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0009	3586	6	5	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0010	3586	4	4	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0011	3587	4	4	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0012	3586	4	4	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0013	3585	4	3	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0014	3586	4	3	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0015	3586	3	3	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0016	3586	3	2	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0017	3586	2	2	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0018	3586	2	2	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151