JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP1B1_chr2_38062509_38081151	0/0	t0019	3587	2	0	0	0	0	2	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0020	3586	2	0	0	1	0	1	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0021	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0022	3586	1	0	0	0	0	1	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0023	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0024	3586	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0025	3586	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0026	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0027	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0028	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0029	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0030	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0031	3586	1	0	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0032	3587	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0033	3587	1	0	0	0	0	1	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0034	3587	1	0	0	0	0	1	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0035	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0036	3586	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	t0037	3587	1	0	0	0	1	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP20A1_chr2_203234018_203311026	0/0	t0001	9164	28	0	3	19	3	3	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0002	9165	13	0	3	8	1	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/1	t0003	9165	11	1	8	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0004	9147	9	0	3	6	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0005	9166	9	3	2	1	1	2	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0006	9165	7	3	4	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0007	9165	7	0	1	6	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0008	9166	7	0	2	3	0	2	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0009	9165	7	0	1	6	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0010	9165	6	1	0	4	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0011	9148	6	0	1	4	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0012	9164	5	3	2	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0013	9166	5	0	1	2	1	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0014	9163	5	4	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0015	9164	4	4	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0016	9164	4	0	2	1	1	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0017	9164	4	2	1	0	1	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0018	9168	4	0	0	4	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0019	9166	4	0	0	3	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0020	9163	4	4	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0021	9166	3	0	0	2	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0022	9164	3	0	0	3	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0023	9164	3	3	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0024	9162	3	3	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0025	9165	2	0	0	2	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0026	9164	2	2	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0027	9166	2	2	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0028	9165	2	0	2	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0029	9166	2	0	0	2	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0030	9165	2	1	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0031	9165	2	0	0	2	0	0	copy fasta	CYP20A1	chr2	203234018	203311026