Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADIPOQ_chr3_186837710_186863463	0/0	t0066	3808	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0067	3808	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0068	3810	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	t0069	3809	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOR1_chr1_202935832_202963312	1/1	t0001	964	221	47	38	116	4	14	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0002	964	152	26	38	59	10	19	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0003	964	47	0	2	39	0	6	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0004	964	4	4	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0005	964	4	4	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0006	964	3	3	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0007	964	3	3	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0008	964	1	0	0	1	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0009	964	1	0	0	0	0	1	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0010	964	1	1	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0011	964	1	1	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0012	964	1	0	0	1	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0013	964	1	0	0	1	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0014	964	1	0	0	1	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	t0015	930	1	1	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR2_chr12_1686070_1793674	0/0	t0001	2811	114	7	37	52	3	15	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0002	2811	67	9	13	36	3	6	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0003	2811	40	18	3	15	1	3	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0004	2811	38	25	6	5	0	2	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0005	2811	34	0	11	15	3	5	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0006	2811	33	5	0	27	0	1	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	1/0	t0007	2811	10	8	1	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0008	2811	5	5	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0009	2811	5	0	0	5	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0010	2811	4	0	0	4	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0011	2811	3	0	0	0	3	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0012	2811	3	3	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0013	2811	2	2	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0014	2811	2	0	0	2	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0015	2811	2	0	0	2	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0016	2811	2	2	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0017	2811	2	1	1	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0018	2811	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0019	2811	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0020	2811	1	0	1	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/1	t0021	2811	1	0	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0022	2811	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0023	2811	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0024	2811	1	0	0	0	1	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0025	2811	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0026	2811	1	1	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0027	2811	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0028	2811	1	0	1	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	t0029	2811	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIRF_chr10_86963482_86975915	1/1	t0001	397	229	63	52	77	10	25	copy fasta	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	t0002	397	167	20	26	94	8	19	copy fasta	ADIRF	chr10	86963482	86975915