JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP20A1_chr2_203234018_203311026	0/0	t0082	9165	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0083	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0084	9166	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0085	9166	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0086	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0087	9166	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0088	9164	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0089	9163	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0090	9163	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0091	9149	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0092	9147	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0093	9148	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0094	9145	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0095	9146	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0096	9146	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0097	9161	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0098	9168	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0099	9167	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0100	9168	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0101	9168	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0102	9167	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0103	9167	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0104	9168	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0105	9167	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0106	9168	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0107	9168	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0108	9166	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0109	9167	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0110	9166	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0111	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0112	9165	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0113	9164	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0114	9165	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0115	9165	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0116	9166	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0117	9167	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0118	9168	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0119	9168	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0120	9166	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0121	9165	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0122	9165	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0123	9165	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0124	9165	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0125	9166	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0126	9167	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0127	9166	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0128	9167	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0129	9167	1	0	0	0	1	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0130	9167	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0131	9166	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026