JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP20A1_chr2_203234018_203311026	0/0	t0132	9166	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0133	9166	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0134	9166	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0135	9152	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0136	9164	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0137	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0138	9164	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0139	9162	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0140	9163	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0141	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0142	9165	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0143	9165	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0144	9166	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0145	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0146	9164	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0147	9164	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0148	9165	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0149	9164	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0150	9167	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0151	9165	1	0	0	1	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0152	9165	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0153	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0154	9163	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0155	9166	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0156	9164	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	1/0	t0157	9164	1	0	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0158	9168	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0159	9165	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0160	9164	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0161	9148	1	0	0	0	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0162	9167	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0163	9168	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0164	9166	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0165	9166	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0166	9165	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0167	9163	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0168	9164	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0169	9163	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0170	9162	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0171	9162	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0172	9162	1	0	1	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	t0173	9164	1	1	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026
CYP21A2_chr6_32033415_32046644	0/1	t0001	519	245	45	44	127	5	23	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0002	519	108	13	22	57	5	11	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0003	519	32	14	1	4	3	10	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0004	519	15	8	5	0	2	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0005	519	13	0	4	7	1	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0006	519	11	10	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0007	519	6	1	3	1	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0008	519	5	0	0	5	0	0	copy fasta	CYP21A2	chr6	32033415	32046644