JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP21A2_chr6_32033415_32046644	0/0	t0009	519	3	1	2	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0010	519	3	0	0	3	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0011	519	2	0	0	2	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0012	519	2	0	0	0	2	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0013	519	2	0	0	2	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0014	519	2	0	2	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0015	519	2	2	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0016	519	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0017	519	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0018	519	1	0	0	0	0	1	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0019	519	1	0	0	1	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0020	519	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0021	519	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0022	519	1	1	0	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP21A2_chr6_32033415_32046644	0/0	t0023	519	1	0	1	0	0	0	copy fasta	CYP21A2	chr6	32033415	32046644
CYP24A1_chr20_54148446_54178986	0/0	t0001	1736	174	14	22	114	4	20	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	1/1	t0002	1734	142	21	37	69	4	9	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0003	1736	53	4	12	23	1	13	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0004	1736	15	15	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0005	1734	13	3	5	0	2	3	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0006	1736	6	4	2	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0007	1734	5	5	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0008	1736	5	5	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0009	1734	5	0	0	5	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0010	1736	5	5	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0011	1736	4	3	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0012	1736	3	3	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0013	1733	3	0	0	0	0	3	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0014	1736	3	3	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0015	1733	2	0	0	0	1	1	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0016	1736	2	2	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0017	1736	2	0	0	2	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0018	1736	2	2	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0019	1734	2	1	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0020	1736	2	2	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0021	1736	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0022	1736	1	0	0	0	0	1	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0023	1736	1	0	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0024	1736	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0025	1734	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0026	1734	1	0	0	1	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0027	1736	1	1	0	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP24A1_chr20_54148446_54178986	0/0	t0028	1736	1	0	1	0	0	0	copy fasta	CYP24A1	chr20	54148446	54178986
CYP26A1_chr10_93068893_93082885	0/1	t0001	624	404	84	78	182	14	45	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	1/0	t0002	624	9	8	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	t0003	624	2	2	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	t0004	624	1	1	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	t0005	624	1	0	0	0	0	1	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26A1_chr10_93068893_93082885	0/0	t0006	624	1	1	0	0	0	0	copy fasta	CYP26A1	chr10	93068893	93082885
CYP26B1_chr2_72124238_72152862	1/1	t0001	3018	114	12	44	32	9	15	copy fasta	CYP26B1	chr2	72124238	72152862