JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP26B1_chr2_72124238_72152862	0/0	t0002	3019	57	0	5	49	1	2	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0003	3024	18	16	2	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0004	3018	16	15	1	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0005	3025	8	2	2	3	0	1	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0006	3018	6	0	0	6	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0007	3025	6	1	4	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0008	3018	6	0	0	6	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0009	3025	5	5	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0010	3025	5	1	1	0	2	1	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0011	3019	5	5	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0012	3025	5	1	2	0	1	1	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0013	3024	4	4	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0014	3018	4	2	0	2	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0015	3019	3	2	1	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0016	3018	3	3	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0017	3025	3	0	0	3	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0018	3025	2	0	0	0	0	2	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0019	3019	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0020	3025	2	1	0	0	0	1	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0021	3024	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0022	3024	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0023	3018	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0024	3018	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0025	3018	2	0	2	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0026	3018	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0027	3018	2	2	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0028	3019	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0029	3024	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0030	3024	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0031	3018	1	0	1	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0032	3031	1	0	1	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0033	3019	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0034	3025	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0035	3025	1	0	1	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0036	3018	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0037	3059	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0038	3019	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0039	3024	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0040	3018	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0041	3018	1	0	1	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0042	3019	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0043	3024	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0044	3024	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0045	3024	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0046	3018	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0047	3019	1	1	0	0	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0048	3018	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0049	3018	1	0	0	0	1	0	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0050	3018	1	0	0	0	0	1	copy fasta	CYP26B1	chr2	72124238	72152862
CYP26B1_chr2_72124238_72152862	0/0	t0051	3018	1	0	0	1	0	0	copy fasta	CYP26B1	chr2	72124238	72152862