JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP26C1_chr10_93055798_93074540	1/1	t0001	1310	325	81	53	147	10	32	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	t0002	1310	60	8	20	16	6	10	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	t0003	1309	5	0	0	5	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	t0004	1310	4	4	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	t0005	1310	2	2	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	t0006	1310	1	0	1	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP26C1_chr10_93055798_93074540	0/0	t0007	1310	1	1	0	0	0	0	copy fasta	CYP26C1	chr10	93055798	93074540
CYP27A1_chr2_218777147_218820293	1/1	t0001	300	295	96	58	97	10	32	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	t0002	300	2	2	0	0	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27A1_chr2_218777147_218820293	0/0	t0003	300	1	0	0	1	0	0	copy fasta	CYP27A1	chr2	218777147	218820293
CYP27B1_chr12_57757334_57772078	1/1	t0001	846	341	86	68	136	14	35	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	t0002	846	6	4	2	0	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	t0003	846	3	0	0	1	0	2	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	t0004	846	1	0	0	1	0	0	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27B1_chr12_57757334_57772078	0/0	t0005	846	1	0	0	0	0	1	copy fasta	CYP27B1	chr12	57757334	57772078
CYP27C1_chr2_127178832_127225299	0/1	t0001	3470	111	16	28	52	3	11	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0002	3474	83	3	25	40	4	11	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0003	3475	21	12	5	4	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0004	3470	15	0	2	3	3	7	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0005	3480	12	0	1	9	0	2	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0006	3465	12	6	0	4	0	2	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0007	3465	11	6	3	0	0	2	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0008	3465	7	7	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0009	3465	6	6	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0010	3465	5	5	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0011	3470	5	4	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0012	3479	4	2	0	1	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	1/0	t0013	3469	4	0	1	2	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0014	3475	3	0	0	2	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0015	3470	3	3	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0016	3465	3	2	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0017	3444	3	3	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0018	3475	3	3	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0019	3472	3	3	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0020	3465	3	3	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0021	3470	2	2	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0022	3470	2	0	2	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0023	3470	2	0	0	2	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0024	3474	2	0	0	2	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0025	3474	2	0	0	2	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0026	3475	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0027	3470	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0028	3480	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0029	3475	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0030	3480	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0031	3475	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0032	3470	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0033	3470	1	0	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0034	3470	1	0	0	0	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0035	3470	1	0	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299