JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP27C1_chr2_127178832_127225299	0/0	t0036	3470	1	0	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0037	3470	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0038	3470	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0039	3465	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0040	3465	1	0	1	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0041	3467	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0042	3465	1	1	0	0	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0043	3474	1	0	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0044	3479	1	0	0	0	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0045	3474	1	0	0	0	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0046	3474	1	0	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0047	3474	1	0	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0048	3474	1	0	0	0	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0049	3464	1	0	0	0	0	1	copy fasta	CYP27C1	chr2	127178832	127225299
CYP27C1_chr2_127178832_127225299	0/0	t0050	3474	1	0	0	1	0	0	copy fasta	CYP27C1	chr2	127178832	127225299
CYP2A13_chr19_41083451_41101195	1/1	t0001	276	324	46	63	167	10	36	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	t0002	276	52	23	17	4	0	8	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	t0003	276	39	21	4	10	0	4	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	t0004	276	3	3	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	t0005	276	2	2	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	t0006	276	1	0	0	1	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A13_chr19_41083451_41101195	0/0	t0007	276	1	1	0	0	0	0	copy fasta	CYP2A13	chr19	41083451	41101195
CYP2A6_chr19_40838541_40855447	0/0	t0000	0	1	0	0	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0001	277	142	53	25	48	8	8	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0002	276	104	11	28	47	5	13	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0003	277	67	19	15	17	2	14	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0004	276	29	0	0	29	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0005	277	9	1	3	0	1	4	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0006	276	6	0	0	6	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0007	56	6	0	0	5	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0008	276	4	1	2	1	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0009	277	4	0	2	0	1	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0010	276	3	3	0	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0011	276	2	0	2	0	0	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0012	256	2	0	1	0	1	0	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A6_chr19_40838541_40855447	0/0	t0013	277	1	0	0	0	0	1	copy fasta	CYP2A6	chr19	40838541	40855447
CYP2A7_chr19_40870439_40887231	0/1	t0001	276	172	67	36	55	3	10	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0002	276	96	18	14	44	4	16	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	1/0	t0003	276	60	0	28	15	3	13	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0004	276	31	1	3	26	0	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0005	276	20	1	0	16	1	2	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0006	276	5	0	3	0	1	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0007	276	5	4	0	0	0	1	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0008	276	2	1	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0009	276	2	2	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0010	276	2	0	2	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0011	276	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0012	276	1	1	0	0	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2A7_chr19_40870439_40887231	0/0	t0013	276	1	0	0	1	0	0	copy fasta	CYP2A7	chr19	40870439	40887231
CYP2B6_chr19_40986282_41023398	0/1	t0001	1595	91	13	27	29	5	16	copy fasta	CYP2B6	chr19	40986282	41023398