JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP2B6_chr19_40986282_41023398	1/0	t0002	1596	74	2	8	53	3	7	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0003	1594	59	0	6	45	3	5	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0004	1595	50	1	8	37	2	2	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0005	1595	28	15	5	4	0	4	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0006	1595	15	12	2	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0007	1598	10	0	6	0	3	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0008	1595	7	6	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0009	1594	7	0	0	7	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0010	1595	7	7	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0011	1596	6	0	0	6	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0012	1595	6	6	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0013	1596	5	0	0	5	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0014	1595	4	4	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0015	1596	4	4	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0016	1595	4	3	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0017	1595	4	0	4	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0018	1596	4	0	0	4	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0019	1596	4	0	0	3	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0020	1594	3	0	0	3	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0021	1595	3	3	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0022	1594	3	0	1	1	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0023	1596	2	2	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0024	1595	2	2	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0025	1596	2	0	1	0	1	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0026	1596	2	1	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0027	1596	2	1	0	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0028	1595	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0029	1595	2	2	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0030	1594	2	0	0	2	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0031	1595	2	2	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0032	1595	1	0	0	0	1	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0033	1595	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0034	1595	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0035	1595	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0036	1596	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0037	1595	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0038	1596	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0039	1595	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0040	1595	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0041	1596	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0042	1595	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0043	1594	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0044	1595	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0045	1595	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0046	1596	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0047	1595	1	0	0	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0048	1595	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0049	1595	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0050	1595	1	0	1	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0051	1594	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398