JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP2B6_chr19_40986282_41023398	0/0	t0052	1595	1	0	0	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0053	1596	1	0	0	1	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0054	1594	1	0	0	0	0	1	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2B6_chr19_40986282_41023398	0/0	t0055	1595	1	1	0	0	0	0	copy fasta	CYP2B6	chr19	40986282	41023398
CYP2C18_chr10_94678729_94741190	1/0	t0001	838	181	72	30	51	11	16	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/1	t0002	838	65	2	19	30	5	8	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0003	838	51	0	1	44	0	6	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0004	838	39	13	4	15	0	7	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0005	839	18	0	2	12	1	3	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0006	838	17	0	0	13	0	4	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0007	838	2	0	1	0	1	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0008	838	1	0	1	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0009	838	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0010	838	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0011	838	1	0	0	1	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C18_chr10_94678729_94741190	0/0	t0012	838	1	1	0	0	0	0	copy fasta	CYP2C18	chr10	94678729	94741190
CYP2C19_chr10_94757681_94860547	0/1	t0001	2660	135	24	28	59	9	14	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0002	2661	81	10	6	51	1	13	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0003	2657	42	23	9	2	1	7	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0004	2663	18	0	2	12	1	3	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	1/0	t0005	2659	17	6	4	3	2	1	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0006	2661	17	0	0	13	0	4	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0007	2660	11	11	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0008	2661	6	1	0	5	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0009	2660	5	5	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0010	2659	4	0	0	4	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0011	2658	4	0	2	0	1	1	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0012	2660	3	3	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0013	2660	3	0	0	3	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0014	2660	2	0	0	2	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0015	2660	2	2	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0016	2661	2	0	0	2	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0017	2661	2	2	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0018	2659	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0019	2659	1	0	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0020	2656	1	0	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0021	2660	1	0	0	1	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0022	2660	1	0	0	0	1	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0023	2660	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0024	2657	1	0	0	0	0	1	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0025	2661	1	0	1	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0026	2663	1	0	0	1	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C19_chr10_94757681_94860547	0/0	t0027	2660	1	1	0	0	0	0	copy fasta	CYP2C19	chr10	94757681	94860547
CYP2C8_chr10_95031772_95074497	1/1	t0001	452	238	56	51	92	12	25	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	t0002	452	133	27	9	76	2	19	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	t0003	452	4	4	0	0	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C8_chr10_95031772_95074497	0/0	t0004	452	1	1	0	0	0	0	copy fasta	CYP2C8	chr10	95031772	95074497
CYP2C9_chr10_94933658_94995091	1/1	t0001	1089	164	30	31	77	9	15	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	t0002	1089	94	48	13	12	6	15	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	t0003	1089	88	1	7	66	1	13	copy fasta	CYP2C9	chr10	94933658	94995091