JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP2C9_chr10_94933658_94995091	0/0	t0004	1102	12	0	2	6	1	3	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	t0005	1089	9	1	7	0	1	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	t0006	1089	3	3	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	t0007	1089	2	0	0	2	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	t0008	1089	1	0	0	1	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2C9_chr10_94933658_94995091	0/0	t0009	1089	1	1	0	0	0	0	copy fasta	CYP2C9	chr10	94933658	94995091
CYP2D6_chr22_42121499_42135810	0/0	t0000	0	24	5	5	11	1	2	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/1	t0001	95	392	88	77	167	17	42	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2D6_chr22_42121499_42135810	0/0	t0002	95	1	1	0	0	0	0	copy fasta	CYP2D6	chr22	42121499	42135810
CYP2E1_chr10_133522363_133544123	0/0	t0001	194	194	46	25	102	5	16	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/1	t0002	194	177	13	35	93	11	24	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	t0003	194	18	17	1	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	t0004	194	10	9	1	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	t0005	194	8	8	0	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	t0006	193	4	4	0	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	1/0	t0007	193	2	1	0	0	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2E1_chr10_133522363_133544123	0/0	t0008	194	1	0	0	1	0	0	copy fasta	CYP2E1	chr10	133522363	133544123
CYP2F1_chr19_41109432_41133381	1/1	t0001	372	162	20	31	85	9	15	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0002	373	92	23	21	30	6	12	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0003	372	35	21	3	7	0	4	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0004	373	25	11	4	3	3	4	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0005	373	16	0	8	5	0	3	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0006	373	12	12	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0007	359	9	0	0	9	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0008	372	7	0	0	7	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0009	372	6	6	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0010	373	3	3	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0011	373	1	0	0	1	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0012	372	1	0	0	0	0	1	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0013	372	1	0	1	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0014	372	1	0	0	0	0	1	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0015	373	1	0	0	1	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0016	372	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2F1_chr19_41109432_41133381	0/0	t0017	372	1	1	0	0	0	0	copy fasta	CYP2F1	chr19	41109432	41133381
CYP2J2_chr1_59888308_59931773	1/1	t0001	371	312	60	65	141	13	31	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	t0002	371	30	12	2	7	2	7	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2J2_chr1_59888308_59931773	0/0	t0003	371	22	8	1	12	1	0	copy fasta	CYP2J2	chr1	59888308	59931773
CYP2R1_chr11_14872440_14897231	1/1	t0001	709	393	86	71	181	14	39	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	t0002	709	8	0	0	8	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	t0003	916	1	0	0	0	0	1	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	t0004	709	1	0	1	0	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2R1_chr11_14872440_14897231	0/0	t0005	709	1	0	0	1	0	0	copy fasta	CYP2R1	chr11	14872440	14897231
CYP2S1_chr19_41188219_41212539	1/0	t0001	1098	246	28	48	125	10	34	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/1	t0002	1098	116	45	17	39	4	10	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0003	1095	17	0	0	17	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0004	1098	9	9	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0005	1095	6	0	0	6	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0006	1098	6	2	1	1	1	1	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0007	1098	4	1	1	1	1	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0008	1098	3	0	2	0	0	1	copy fasta	CYP2S1	chr19	41188219	41212539