JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP2S1_chr19_41188219_41212539	0/0	t0009	1098	3	0	0	2	0	1	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0010	1098	3	3	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0011	1098	1	0	1	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0012	1098	1	0	0	0	0	1	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0013	1098	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0014	1098	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0015	1098	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0016	1098	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0017	1098	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0018	1098	1	1	0	0	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2S1_chr19_41188219_41212539	0/0	t0019	1079	1	0	0	1	0	0	copy fasta	CYP2S1	chr19	41188219	41212539
CYP2U1_chr4_107926549_107958461	1/0	t0001	3134	162	30	28	89	5	9	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0002	3134	116	19	24	55	2	16	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0003	3134	24	6	4	9	4	1	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0004	3134	18	10	4	1	0	3	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/1	t0005	3134	14	1	2	4	0	6	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0006	3134	10	6	0	0	0	4	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0007	3134	8	0	4	0	3	1	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0008	3134	6	4	2	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0009	3134	3	3	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0010	3134	3	3	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0011	3134	3	3	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0012	3134	2	0	2	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0013	3134	1	0	1	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0014	3134	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0015	3134	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0016	3134	1	0	0	0	0	1	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0017	3134	1	1	0	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0018	3134	1	0	0	0	0	1	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0019	3134	1	0	0	1	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0020	3134	1	0	0	1	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0021	3134	1	0	0	0	0	1	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0022	3134	1	0	1	0	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0023	3134	1	0	0	1	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0024	3134	1	0	0	0	0	1	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2U1_chr4_107926549_107958461	0/0	t0025	3134	1	0	0	1	0	0	copy fasta	CYP2U1	chr4	107926549	107958461
CYP2W1_chr7_978181_994640	1/0	t0001	850	328	78	45	158	13	33	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0002	850	51	4	19	17	2	9	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0003	850	10	9	1	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0004	850	6	4	2	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/1	t0005	850	5	0	2	0	1	1	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0006	850	2	1	1	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0007	850	1	0	0	1	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0008	850	1	0	1	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0009	850	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0010	850	1	0	1	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0011	850	1	0	0	0	0	1	copy fasta	CYP2W1	chr7	978181	994640
CYP2W1_chr7_978181_994640	0/0	t0012	850	1	1	0	0	0	0	copy fasta	CYP2W1	chr7	978181	994640
CYP39A1_chr6_46544580_46657818	1/0	t0001	1023	246	57	40	104	9	35	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/1	t0002	1023	47	19	10	15	1	1	copy fasta	CYP39A1	chr6	46544580	46657818