JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP39A1_chr6_46544580_46657818	0/0	t0003	1023	7	7	0	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	t0004	1023	5	5	0	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	t0005	1023	1	1	0	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	t0006	1023	1	0	0	1	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	t0007	1023	1	0	0	0	0	1	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	t0008	1023	1	0	0	0	0	1	copy fasta	CYP39A1	chr6	46544580	46657818
CYP39A1_chr6_46544580_46657818	0/0	t0009	1023	1	1	0	0	0	0	copy fasta	CYP39A1	chr6	46544580	46657818
CYP3A43_chr7_99823013_99871093	1/1	t0001	196	323	87	62	118	12	42	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A43_chr7_99823013_99871093	0/0	t0002	196	3	3	0	0	0	0	copy fasta	CYP3A43	chr7	99823013	99871093
CYP3A4_chr7_99751967_99789184	1/0	t0001	1270	161	34	47	58	7	14	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/1	t0002	1269	125	50	6	44	3	21	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	t0003	1270	6	0	2	0	0	4	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	t0004	1269	3	3	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	t0005	1269	3	0	0	0	0	3	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	t0006	1269	1	1	0	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	t0007	1269	1	0	0	1	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	t0008	1269	1	0	0	1	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A4_chr7_99751967_99789184	0/0	t0009	1270	1	0	1	0	0	0	copy fasta	CYP3A4	chr7	99751967	99789184
CYP3A5_chr7_99643194_99684996	0/0	t0001	212	151	68	8	56	2	17	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	1/1	t0002	212	139	24	24	62	6	21	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A5_chr7_99643194_99684996	0/0	t0003	212	2	0	0	0	0	2	copy fasta	CYP3A5	chr7	99643194	99684996
CYP3A7_chr7_99700036_99740196	0/1	t0001	568	131	50	8	52	4	16	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	1/0	t0002	568	131	23	25	57	8	17	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	t0003	568	11	9	2	0	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	t0004	568	5	5	0	0	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	t0005	568	1	1	0	0	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	t0006	568	1	0	0	0	0	1	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	t0007	568	1	0	0	1	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP3A7_chr7_99700036_99740196	0/0	t0008	568	1	0	1	0	0	0	copy fasta	CYP3A7	chr7	99700036	99740196
CYP46A1_chr14_99679298_99732301	1/1	t0001	695	356	88	70	152	16	28	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0002	695	4	3	1	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0003	695	3	0	0	3	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0004	695	3	3	0	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0005	695	2	2	0	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0006	695	2	0	0	2	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0007	695	1	0	0	1	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0008	695	1	1	0	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0009	695	1	0	1	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP46A1_chr14_99679298_99732301	0/0	t0010	695	1	1	0	0	0	0	copy fasta	CYP46A1	chr14	99679298	99732301
CYP4A11_chr1_46924188_46946476	0/0	t0001	974	174	26	30	86	7	25	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0002	971	106	23	12	55	2	14	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/1	t0003	971	79	9	16	50	1	2	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0004	971	16	0	0	15	1	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	1/0	t0005	971	16	14	1	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0006	974	8	1	5	0	1	1	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0007	974	7	5	2	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0008	971	4	4	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0009	971	3	3	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0010	974	3	2	1	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0011	971	2	2	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476