JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP4A11_chr1_46924188_46946476	0/0	t0012	971	2	2	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0013	974	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0014	974	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0015	971	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0016	971	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0017	971	1	0	0	1	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0018	974	1	0	1	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0019	971	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A11_chr1_46924188_46946476	0/0	t0020	971	1	1	0	0	0	0	copy fasta	CYP4A11	chr1	46924188	46946476
CYP4A22_chr1_47132441_47154727	0/1	t0001	976	119	25	18	65	4	6	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0002	976	102	5	14	76	1	6	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0003	976	89	13	9	49	1	17	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0004	976	64	40	5	14	3	2	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	1/0	t0005	976	46	3	29	0	4	9	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0006	976	5	1	0	0	1	3	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0007	976	3	0	0	3	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0008	976	2	0	0	2	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0009	976	2	0	0	2	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0010	976	1	0	0	0	0	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0011	976	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0012	976	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0013	976	1	0	0	0	0	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0014	976	1	0	0	0	0	1	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0015	976	1	1	0	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0016	976	1	0	0	1	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4A22_chr1_47132441_47154727	0/0	t0017	976	1	0	1	0	0	0	copy fasta	CYP4A22	chr1	47132441	47154727
CYP4B1_chr1_46794046_46824413	1/0	t0001	636	233	57	39	105	8	23	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0002	636	78	9	10	48	2	9	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/1	t0003	636	55	5	13	33	2	1	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0004	636	16	13	0	0	0	3	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0005	636	7	6	1	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0006	636	6	6	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0007	636	2	2	0	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0008	636	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0009	636	1	0	0	1	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4B1_chr1_46794046_46824413	0/0	t0010	636	1	0	1	0	0	0	copy fasta	CYP4B1	chr1	46794046	46824413
CYP4F11_chr19_15907377_15939529	0/0	t0001	1473	27	0	0	26	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0002	1476	14	0	2	8	3	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0003	1471	14	0	0	14	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0004	1479	11	0	2	8	1	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0005	1479	8	0	2	4	1	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0006	1480	8	2	2	3	1	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0007	1492	8	8	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0008	1475	7	0	0	6	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0009	1473	7	0	0	7	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0010	1477	6	0	2	4	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0011	1473	6	0	6	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	1/0	t0012	1477	6	1	0	0	1	3	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0013	1592	6	0	1	5	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0014	1481	5	0	1	1	1	2	copy fasta	CYP4F11	chr19	15907377	15939529