JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP4F11_chr19_15907377_15939529	0/0	t0015	1479	5	0	3	0	2	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0016	1469	5	0	0	5	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0017	1471	4	0	0	4	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0018	1483	4	0	1	3	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0019	1476	4	2	2	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0020	1475	4	0	1	3	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0021	1475	4	4	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0022	1473	3	3	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0023	1477	3	0	0	1	0	2	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0024	1476	3	0	0	3	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0025	1476	3	2	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0026	1486	3	3	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0027	1469	3	0	0	3	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0028	1478	3	3	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0029	1595	3	0	0	3	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0030	1599	3	0	0	2	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0031	1601	3	3	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0032	1474	2	2	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0033	1474	2	1	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0034	1478	2	0	0	0	1	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0035	1474	2	0	1	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0036	1478	2	0	1	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0037	1476	2	0	1	0	1	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0038	1474	2	0	1	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0039	1594	2	0	0	0	0	2	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0040	1478	2	2	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0041	1478	2	2	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0042	1494	2	0	2	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0043	1475	2	0	1	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0044	1475	2	2	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0045	1476	2	2	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0046	1473	2	0	0	0	1	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0047	1473	2	1	0	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0048	1477	2	0	1	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0049	1477	2	0	0	2	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0050	1471	2	0	0	2	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0051	1471	2	0	0	2	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0052	1595	2	0	2	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0053	1597	2	0	0	1	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0054	1597	2	1	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0055	1599	2	0	0	0	0	2	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0056	1592	2	0	0	0	0	2	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0057	1601	2	0	1	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0058	1605	2	0	0	1	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0059	1593	2	0	2	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0060	1475	2	0	0	0	2	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0061	1475	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0062	1479	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0063	1480	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0064	1473	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529