JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP4F11_chr19_15907377_15939529	0/0	t0165	1581	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0166	1580	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0167	1587	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0168	1597	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0169	1594	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0170	1594	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0171	1588	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0172	1597	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0173	1585	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0174	1598	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0175	1596	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0176	1596	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0177	1596	1	0	0	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0178	1599	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0179	1603	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0180	1605	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0181	1603	1	0	0	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0182	1603	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0183	1598	1	0	0	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0184	1601	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0185	1601	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0186	1597	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0187	1605	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0188	1603	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0189	1477	1	0	0	0	1	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0190	1475	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0191	1598	1	0	0	0	0	1	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0192	1584	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0193	1587	1	1	0	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0194	1476	1	0	1	0	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F11_chr19_15907377_15939529	0/0	t0195	1586	1	0	0	1	0	0	copy fasta	CYP4F11	chr19	15907377	15939529
CYP4F12_chr19_15668087_15702174	1/1	t0001	139	326	40	66	173	15	30	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	t0002	139	58	30	12	3	1	12	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	t0003	139	10	10	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	t0004	138	9	9	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	t0005	139	4	0	2	0	0	2	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	t0006	139	2	0	0	2	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F12_chr19_15668087_15702174	0/0	t0007	138	1	1	0	0	0	0	copy fasta	CYP4F12	chr19	15668087	15702174
CYP4F22_chr19_15503525_15557317	0/1	t0001	1013	136	12	22	64	14	23	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0002	1013	125	30	20	56	2	17	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	1/0	t0003	1013	58	14	24	13	2	4	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0004	1013	39	30	7	0	0	2	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0005	1014	8	6	1	0	0	1	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0006	1014	6	0	2	3	0	1	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0007	1013	4	4	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0008	1014	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0009	1033	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0010	1013	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0011	1013	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0012	1033	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317