JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP4F22_chr19_15503525_15557317	0/0	t0013	1013	1	1	0	0	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0014	1013	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F22_chr19_15503525_15557317	0/0	t0015	1013	1	0	0	1	0	0	copy fasta	CYP4F22	chr19	15503525	15557317
CYP4F2_chr19_15873023_15903074	0/0	t0000	0	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	1/1	t0001	798	126	39	24	38	5	18	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0002	798	95	1	17	74	0	3	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0003	798	77	7	23	34	7	6	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0004	798	52	20	15	1	6	10	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0005	798	15	13	1	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0006	798	4	4	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0007	798	3	3	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0008	798	2	2	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0009	798	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0010	798	1	0	0	1	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0011	798	1	1	0	0	0	0	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0012	798	1	0	0	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F2_chr19_15873023_15903074	0/0	t0013	798	1	0	0	0	0	1	copy fasta	CYP4F2	chr19	15873023	15903074
CYP4F3_chr19_15635897_15667825	1/1	t0001	3490	84	8	20	28	10	16	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0002	3496	74	0	15	51	1	7	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0003	3486	55	6	8	35	1	5	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0004	3489	28	2	10	10	2	4	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0005	3498	16	2	3	8	0	3	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0006	3497	15	0	4	11	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0007	3499	11	2	1	7	0	1	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0008	3506	9	5	4	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0009	3504	8	8	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0010	3507	7	3	2	0	1	1	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0011	3500	5	0	0	2	0	3	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0012	3505	5	4	0	1	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0013	3509	4	4	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0014	3495	4	0	1	3	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0015	3509	4	2	1	0	0	1	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0016	3504	4	4	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0017	3513	4	2	2	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0018	3508	4	3	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0019	3508	3	3	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0020	3507	3	3	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0021	3495	2	1	1	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0022	3506	2	0	0	2	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0023	3500	2	2	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0024	3495	2	0	0	2	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0025	3490	2	0	0	1	0	1	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0026	3496	2	0	0	2	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0027	3496	2	0	0	2	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0028	3485	2	1	0	1	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0029	3488	2	0	0	2	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0030	3514	2	2	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0031	3491	2	0	1	0	0	1	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0032	3490	2	1	0	1	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F3_chr19_15635897_15667825	0/0	t0033	3506	2	2	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825