JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP4F3_chr19_15635897_15667825	0/0	t0084	3506	1	1	0	0	0	0	copy fasta	CYP4F3	chr19	15635897	15667825
CYP4F8_chr19_15610218_15635639	0/0	t0001	1343	124	4	28	78	3	11	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/1	t0002	1343	98	27	14	33	7	16	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0003	1345	77	15	17	36	3	6	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	1/0	t0004	1345	46	5	8	21	2	9	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0005	1343	33	21	5	3	0	4	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0006	1345	6	4	1	1	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0007	1343	5	0	0	5	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0008	1346	4	4	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0009	1343	4	4	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0010	1343	2	0	0	0	0	2	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0011	1343	2	1	1	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0012	1346	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0013	1343	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0014	1345	1	0	0	0	0	1	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0015	1346	1	0	0	0	0	1	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0016	1345	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0017	1345	1	0	1	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0018	1343	1	0	1	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0019	1343	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0020	1343	1	1	0	0	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0021	1345	1	0	0	1	0	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4F8_chr19_15610218_15635639	0/0	t0022	1343	1	0	0	0	1	0	copy fasta	CYP4F8	chr19	15610218	15635639
CYP4V2_chr4_186186567_186218463	0/0	t0001	3092	65	9	10	40	1	5	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0002	3090	35	0	10	24	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0003	3092	28	3	3	18	4	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0004	3089	22	0	1	20	1	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0005	3092	17	2	2	10	1	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	1/0	t0006	3080	15	3	2	6	0	3	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0007	3098	14	0	3	8	0	3	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0008	3090	13	0	1	12	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0009	3090	11	2	1	7	1	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0010	3089	11	0	1	10	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0011	3098	10	1	0	6	0	3	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0012	3089	9	1	3	5	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0013	3080	9	2	2	4	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0014	3085	8	0	5	0	3	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0015	3096	7	0	2	3	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0016	3082	7	5	0	1	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0017	3080	7	0	4	1	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0018	3098	7	0	3	2	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0019	3094	7	0	0	7	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0020	3078	7	7	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0021	3088	5	1	0	4	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0022	3078	5	3	2	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0023	3100	5	0	1	2	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0024	3094	5	4	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0025	3080	5	5	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0026	3100	5	2	0	1	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/1	t0027	3096	5	0	0	0	2	2	copy fasta	CYP4V2	chr4	186186567	186218463