JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP4V2_chr4_186186567_186218463	0/0	t0028	3100	4	3	0	0	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0029	3087	4	0	0	4	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0030	3096	3	0	0	1	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0031	3076	3	3	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0032	3091	3	1	2	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0033	3096	3	1	0	2	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0034	3092	3	1	2	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0035	3086	2	1	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0036	3082	2	1	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0037	3089	2	2	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0038	3087	2	1	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0039	3085	2	0	0	0	2	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0040	3075	2	2	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0041	3089	2	0	0	2	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0042	3102	2	0	1	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0043	3089	2	0	0	2	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0044	3089	2	1	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0045	3098	2	0	0	0	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0046	3094	2	0	1	0	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0047	3088	2	0	2	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0048	3098	2	0	0	0	0	2	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0049	3090	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0050	3098	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0051	3094	1	0	0	0	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0052	3094	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0053	3092	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0054	3090	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0055	3088	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0056	3080	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0057	3084	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0058	3095	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0059	3091	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0060	3086	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0061	3093	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0062	3104	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0063	3092	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0064	3094	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0065	3094	1	0	0	0	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0066	3092	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0067	3092	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0068	3092	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0069	3092	1	0	0	0	1	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0070	3090	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0071	3088	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0072	3088	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0073	3082	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0074	3078	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0075	3076	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0076	3091	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0077	3089	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463