JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP4V2_chr4_186186567_186218463	0/0	t0078	3089	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0079	3089	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0080	3087	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0081	3089	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0082	3099	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0083	3097	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0084	3086	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0085	3091	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0086	3090	1	0	0	0	0	1	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0087	3085	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0088	3096	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0089	3092	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0090	3092	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0091	3092	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0092	3092	1	0	0	0	1	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0093	3092	1	0	0	0	1	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0094	3080	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0095	3090	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0096	3088	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0097	3086	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0098	3082	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0099	3082	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0100	3082	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0101	3080	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0102	3076	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0103	3091	1	0	0	1	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0104	3085	1	0	1	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4V2_chr4_186186567_186218463	0/0	t0105	3094	1	1	0	0	0	0	copy fasta	CYP4V2	chr4	186186567	186218463
CYP4X1_chr1_47018669_47055751	1/1	t0001	727	338	81	69	136	14	36	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	t0002	727	5	4	1	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	t0003	727	4	4	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	t0004	727	2	2	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4X1_chr1_47018669_47055751	0/0	t0005	727	1	1	0	0	0	0	copy fasta	CYP4X1	chr1	47018669	47055751
CYP4Z1_chr1_47062231_47123318	1/1	t0001	645	315	86	70	115	12	30	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	t0002	645	2	2	0	0	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP4Z1_chr1_47062231_47123318	0/0	t0003	645	1	0	0	1	0	0	copy fasta	CYP4Z1	chr1	47062231	47123318
CYP51A1_chr7_92107153_92139477	1/1	t0001	1626	172	31	32	83	6	18	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0002	1626	101	38	19	28	4	12	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0003	1626	88	12	13	57	0	6	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0004	1625	7	1	0	6	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0005	1625	5	1	0	2	0	2	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0006	1626	4	4	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0007	1625	2	0	1	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0008	1626	2	2	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0009	1626	1	0	1	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0010	1626	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0011	1626	1	0	1	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0012	1626	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0013	1626	1	0	1	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0014	1626	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477