JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP51A1_chr7_92107153_92139477	0/0	t0015	1626	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0016	1626	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0017	1626	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0018	1626	1	1	0	0	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP51A1_chr7_92107153_92139477	0/0	t0019	1626	1	0	0	1	0	0	copy fasta	CYP51A1	chr7	92107153	92139477
CYP7A1_chr8_58485178_58505163	1/1	t0001	1363	307	81	42	148	9	25	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0002	1363	123	15	26	57	6	19	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0003	1363	14	0	1	11	0	2	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0004	1363	3	0	2	0	1	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0005	1363	1	0	0	1	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0006	1363	1	0	0	0	0	1	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0007	1363	1	0	0	1	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0008	1363	1	1	0	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0009	1363	1	0	0	0	0	1	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0010	1363	1	1	0	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0011	1363	1	0	1	0	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0012	1363	1	0	0	1	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7A1_chr8_58485178_58505163	0/0	t0013	1363	1	0	0	1	0	0	copy fasta	CYP7A1	chr8	58485178	58505163
CYP7B1_chr8_64585851_64803737	0/0	t0001	5932	32	5	5	14	2	6	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	1/0	t0002	5942	17	0	1	11	0	4	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0003	5940	15	0	2	9	2	2	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0004	5936	15	2	1	10	1	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0005	5932	13	10	0	3	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0006	5942	12	4	3	3	0	2	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0007	5940	12	8	1	3	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0008	5938	12	4	0	8	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0009	5930	10	9	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0010	5942	9	1	5	1	0	2	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/1	t0011	5944	7	3	2	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0012	5928	7	0	3	2	1	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0013	5934	6	2	0	3	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0014	5934	6	5	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0015	5940	5	0	2	0	1	2	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0016	5934	5	1	1	3	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0017	5932	4	3	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0018	5936	4	0	0	2	1	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0019	5939	4	1	1	0	1	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0020	5934	3	3	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0021	5944	3	0	0	2	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0022	5944	3	0	2	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0023	5930	2	0	0	1	1	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0024	5946	2	0	0	1	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0025	5934	2	2	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0026	5932	2	2	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0027	5938	2	0	1	0	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0028	5935	2	0	2	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0029	5933	2	0	1	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0030	5912	2	0	0	2	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0031	5934	2	2	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0032	5930	1	0	0	0	0	1	copy fasta	CYP7B1	chr8	64585851	64803737