JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP7B1_chr8_64585851_64803737	0/0	t0033	5936	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0034	5932	1	0	0	0	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0035	5942	1	0	0	0	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0036	5936	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0037	5932	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0038	5946	1	0	0	0	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0039	5945	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0040	5941	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0041	5941	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0042	5940	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0043	5938	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0044	5936	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0045	5936	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0046	5933	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0047	5934	1	0	0	0	1	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0048	5932	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0049	5930	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0050	5929	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0051	5928	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0052	5916	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0053	5942	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0054	5942	1	0	0	0	1	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0055	5936	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0056	5934	1	0	0	0	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0057	5932	1	0	0	0	0	1	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0058	6255	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0059	5928	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0060	5936	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0061	5932	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0062	5936	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0063	5940	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0064	5932	1	0	0	1	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0065	5930	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0066	5934	1	1	0	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP7B1_chr8_64585851_64803737	0/0	t0067	5942	1	0	1	0	0	0	copy fasta	CYP7B1	chr8	64585851	64803737
CYP8B1_chr3_42867192_42880879	0/0	t0001	2184	137	14	29	80	2	12	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	1/1	t0002	2183	109	21	25	38	9	14	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0003	2183	35	17	10	1	1	6	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0004	2183	32	1	2	24	0	5	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0005	2184	15	3	1	2	2	7	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0006	2184	10	8	2	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0007	2183	8	8	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0008	2184	7	7	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0009	2183	7	5	2	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0010	2183	7	0	0	7	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0011	2183	4	4	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0012	2183	2	0	0	2	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0013	2184	2	2	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0014	2183	2	2	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0015	2184	1	1	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879