JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYP8B1_chr3_42867192_42880879	0/0	t0016	2183	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0017	2184	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0018	2183	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0019	2183	1	1	0	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0020	2184	1	0	1	0	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0021	2184	1	0	0	0	0	1	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0022	2184	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0023	2184	1	0	0	0	0	1	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0024	2183	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYP8B1_chr3_42867192_42880879	0/0	t0025	2183	1	0	0	1	0	0	copy fasta	CYP8B1	chr3	42867192	42880879
CYREN_chr7_135160785_135175707	1/0	t0001	1021	187	36	41	67	8	34	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/1	t0002	1021	173	26	37	93	4	12	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0003	1017	16	13	3	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0004	1021	12	12	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0005	1021	7	0	0	7	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0006	1021	4	4	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0007	1021	3	0	0	3	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0008	1021	2	0	0	0	0	2	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0009	1021	1	0	1	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYREN_chr7_135160785_135175707	0/0	t0010	1021	1	1	0	0	0	0	copy fasta	CYREN	chr7	135160785	135175707
CYRIA_chr2_16544459_16670834	1/1	t0001	3699	105	22	21	32	11	17	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0002	3696	50	2	1	42	0	5	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0003	3699	28	21	7	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0004	3699	23	3	11	0	2	7	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0005	3700	18	14	0	3	1	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0006	3701	9	9	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0007	3699	7	0	1	3	0	3	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0008	3699	4	0	0	4	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0009	3699	4	0	4	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0010	3699	3	3	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0011	3697	3	2	0	0	0	1	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0012	3699	3	2	1	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0013	3699	3	0	0	3	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0014	3700	2	1	1	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0015	3700	2	1	1	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0016	3699	2	0	0	2	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0017	3700	2	0	0	2	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0018	3699	2	2	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0019	3701	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0020	3699	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0021	3699	1	0	0	0	1	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0022	3699	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0023	3699	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0024	3699	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0025	3699	1	0	0	0	0	1	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0026	3699	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0027	3700	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0028	3699	1	0	0	1	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0029	3699	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0030	3699	1	0	0	1	0	0	copy fasta	CYRIA	chr2	16544459	16670834