JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYRIA_chr2_16544459_16670834	0/0	t0031	3699	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0032	3701	1	0	0	0	0	1	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0033	3699	1	0	0	0	0	1	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0034	3700	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0035	3696	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0036	3697	1	0	0	1	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0037	3700	1	1	0	0	0	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIA_chr2_16544459_16670834	0/0	t0038	3696	1	0	0	0	1	0	copy fasta	CYRIA	chr2	16544459	16670834
CYRIB_chr8_129834593_130021560	1/0	t0001	2930	121	42	21	42	4	11	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/1	t0002	2930	114	19	26	56	3	9	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0003	2930	6	6	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0004	2930	5	1	4	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0005	2930	4	4	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0006	2930	4	2	2	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0007	2927	3	0	0	1	0	2	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0008	2930	3	2	1	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0009	2930	3	3	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0010	2930	3	2	1	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0011	2930	2	2	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0012	2931	2	0	0	2	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0013	2933	2	0	1	0	1	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0014	2927	1	0	0	0	0	1	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0015	2930	1	0	0	1	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0016	2930	1	0	0	1	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0017	2931	1	0	1	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0018	2930	1	0	0	1	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0019	2930	1	1	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0020	2930	1	1	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0021	2930	1	1	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0022	2930	1	0	1	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0023	2930	1	0	0	1	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0024	2930	1	0	0	0	0	1	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0025	2930	1	1	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0026	2930	1	0	0	0	0	1	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0027	2930	1	1	0	0	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0028	2930	1	0	0	1	0	0	copy fasta	CYRIB	chr8	129834593	130021560
CYRIB_chr8_129834593_130021560	0/0	t0029	2933	1	0	0	0	0	1	copy fasta	CYRIB	chr8	129834593	130021560
CYS1_chr2_10051473_10085411	0/1	t0001	2569	249	41	53	118	8	28	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	1/0	t0002	2569	70	16	9	34	1	9	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0003	2569	23	21	2	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0004	2569	12	2	4	1	2	3	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0005	2569	11	9	2	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0006	2569	10	1	3	0	4	2	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0007	2569	5	4	0	0	0	1	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0008	2569	5	0	0	5	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0009	2569	3	3	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0010	2569	2	0	2	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0011	2569	2	0	0	2	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0012	2569	2	0	0	2	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0013	2569	2	0	1	0	1	0	copy fasta	CYS1	chr2	10051473	10085411