JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CYS1_chr2_10051473_10085411	0/0	t0014	2569	1	0	0	1	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0015	2569	1	1	0	0	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0016	2569	1	0	0	0	0	1	copy fasta	CYS1	chr2	10051473	10085411
CYS1_chr2_10051473_10085411	0/0	t0017	2569	1	0	0	1	0	0	copy fasta	CYS1	chr2	10051473	10085411
CYSLTR1_chrX_78266468_78332611	0/0	t0001	1690	119	29	20	46	8	16	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	1/0	t0002	1687	109	16	21	61	3	7	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0003	1690	3	2	1	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0004	1687	2	2	0	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0005	1691	2	0	1	1	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0006	1694	1	0	0	1	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0007	1687	1	0	0	1	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0008	1690	1	0	1	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0009	1687	1	1	0	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR1_chrX_78266468_78332611	0/0	t0010	1687	1	0	1	0	0	0	copy fasta	CYSLTR1	chrX	78266468	78332611
CYSLTR2_chr13_48648929_48716226	1/0	t0001	3722	98	13	18	51	1	14	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0002	3722	67	1	12	41	4	9	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0003	3722	40	19	5	11	0	5	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/1	t0004	3722	20	1	10	6	0	2	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0005	3722	16	11	5	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0006	3722	13	5	2	2	2	2	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0007	3722	12	12	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0008	3722	12	0	0	12	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0009	3722	6	6	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0010	3722	6	4	2	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0011	3722	5	4	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0012	3722	4	4	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0013	3722	3	3	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0014	3722	2	0	0	0	0	2	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0015	3722	2	0	0	2	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0016	3722	1	0	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0017	3675	1	0	0	1	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0018	3722	1	0	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0019	3722	1	0	0	0	1	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0020	3722	1	0	1	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0021	3722	1	1	0	0	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0022	3722	1	0	0	0	0	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0023	3722	1	0	0	0	0	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0024	3722	1	0	0	0	0	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0025	3722	1	0	0	1	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0026	3722	1	0	0	1	0	0	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSLTR2_chr13_48648929_48716226	0/0	t0027	3722	1	0	0	0	0	1	copy fasta	CYSLTR2	chr13	48648929	48716226
CYSRT1_chr9_137220174_137231315	1/1	t0001	328	390	96	81	154	17	40	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	t0002	328	1	1	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	t0003	328	1	0	1	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	t0004	328	1	1	0	0	0	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSRT1_chr9_137220174_137231315	0/0	t0005	328	1	0	0	0	1	0	copy fasta	CYSRT1	chr9	137220174	137231315
CYSTM1_chr5_140170188_140248789	1/1	t0001	497	226	64	44	90	5	21	copy fasta	CYSTM1	chr5	140170188	140248789
CYSTM1_chr5_140170188_140248789	0/0	t0002	497	48	2	7	30	4	5	copy fasta	CYSTM1	chr5	140170188	140248789
CYSTM1_chr5_140170188_140248789	0/0	t0003	497	47	9	7	26	1	4	copy fasta	CYSTM1	chr5	140170188	140248789
CYSTM1_chr5_140170188_140248789	0/0	t0004	497	1	0	0	0	0	1	copy fasta	CYSTM1	chr5	140170188	140248789